Publikationen | Max-Planck Einheit für die Wissenschaft der Pathogene

Max-Planck Einheit für die Wissenschaft der Pathogene

Publikationen

Zeitschriftenartikel (58)

2024

Huerta M, Cornejo F, Aburto C, Illanes A, Vera C und Guerrero C. (2024). Enzymatic production of rare sugars with a new mutant of cellobiose 2-epimerase from Caldicellulosiruptor saccharolyticus. Bioresource Technology, 391, 129936.

MPG.PuRe

2023

Goldlust K, Ducret A, Halte M, Dedieu-Berne A, Erhardt M und Lesterlin C. (2023). The F pilus serves as a conduit for the DNA during conjugation between physically distant bacteria. Proc. Natl. Acad. Sci. U.S.A., 120(47), e2310842120.

MPG.PuRe

Naseri G, Raasch H, Charpentier E und Erhardt M. (2023). A versatile regulatory toolkit of arabinose-inducible artificial transcription factors for Enterobacteriaceae. Communications biology, 6(1), 1005.

MPG.PuRe

Broglia L, Le Rhun A und Charpentier E. (2023). Methodologies for bacterial ribonuclease characterization using RNA-seq. FEMS microbiology reviews, 47(5).

MPG.PuRe

Grätz L, Kowalski-Jahn M, Scharf MM, Kozielewicz P, Jahn M, Bous J, Lambert NA, Gloriam DE und Schulte G. (2023). Pathway selectivity in Frizzleds is achieved by conserved micro-switches defining pathway-determining, active conformations. Nat Commun, 14(1), 4573.

MPG.PuRe

Hu H, Popp PF, Santiveri M, Roa-Eguiara A, Yan Y, Martin FJO, Liu Z, Wadhwa N, Wang Y, Erhardt M und Taylor NMI. (2023). Ion selectivity and rotor coupling of the Vibrio flagellar sodium-driven stator unit. Nature communications, 14(1), 4411.

MPG.PuRe

Miao R, Jahn M, Shabestary K, Peltier G und Hudson EP. (2023). CRISPR interference screens reveal growth–robustness tradeoffs in Synechocystis sp. PCC 6803 across growth conditions. The Plant Cell, koad208.

MPG.PuRe

Saleh DO, Horstmann JA, Giralt-Zúñiga M, Weber W, Kaganovitch E, Durairaj AC, Klotzsch E, Strowig T und Erhardt M. (2023). SPI-1 virulence gene expression modulates motility of Salmonella Typhimurium in a proton motive force- and adhesins-dependent manner. PLoS pathogens, 19(6), e1011451.

MPG.PuRe

Naseri G. (2023). A roadmap to establish a comprehensive platform for sustainable manufacturing of natural products in yeast. Nat Commun, 14(1), 1916.

MPG.PuRe

Driller K, Cornejo FA und Turgay K. (2023). (p)ppGpp – an important player during heat shock response. microLife, 4, uqad017.

MPG.PuRe

Hengge R, Pruteanu M, Stülke J, Tschowri N und Turgay K. (2023). Recent advances and perspectives in nucleotide second messenger signaling in bacteria. microLife, 4, uqad015.

MPG.PuRe

Roske Y, Lindemann F, Diehl A, Cremer N, Higman VA, Schlegel B, Leidert M, Driller K, Turgay K, Schmieder P, Heinemann U und Oschkinat H. (2023). TapA acts as specific chaperone in TasA filament formation by strand complementation. Proceedings of the National Academy of Sciences, 120.

MPG.PuRe

Wulff TF, Hahnke K, Lécrivain A-L, Schmidt K, Ahmed-Begrich R, Finstermeier K und Charpentier E. (2023). Dynamics of diversified A-to-I editing in Streptococcus pyogenes is governed by changes in mRNA stability. bioRxiv.

MPG.PuRe

2022

Christensen S, Rämisch S und André I. (2022). DnaK response to expression of protein mutants is dependent on translation rate and stability. Communications Biology, 5(1), 597.

MPG.PuRe

Tcyganov EN, Sanseviero E, Marvel D, Beer T, Tang H-Y, Hembach P, Speicher DW, Zhang Q, Donthireddy LR, Mostafa A, Tsyganova S, Pisarev V, Laufer T, Ignatov D, Ferrone S, Meyer C, Maby-El Hajjami H, Speiser DE, Altiok S, … Gabrilovich DI. (2022). Peroxynitrite in the tumor microenvironment changes the profile of antigens allowing escape from cancer immunotherapy. Cancer Cell, 40(10), 1173–1189.e6.

MPG.PuRe

Buttress JA, Halte M, te Winkel JD, Erhardt M, Popp PF und Strahl H. (2022). A guide for membrane potential measurements in Gram-negative bacteria using voltage-sensitive dyes. Microbiology, 168(9), 001227 .

MPG.PuRe

Popp PF und Erhardt M. (2022). Supercoiled filaments propel them all. Cell, 185(19), 3461–3463.

MPG.PuRe

Stelbrink B, Von Rintelen T, Richter K, Finstermeier K, Frahnert S, Cracraft J und Hofreiter M. (2022). Insights into the geographical origin and phylogeographical patterns of Paradisaea birds-of-paradise. Zoological Journal of the Linnean Society, zlac010.

MPG.PuRe

Halte M, Wörmann ME, Bogisch M, Erhardt M und Tschowri N. (2022). BldD‐based bimolecular fluorescence complementation for in vivo detection of the second messenger cyclic di‐GMP. Molecular Microbiology, 117(3), 705–713.

MPG.PuRe

Badr A, Eltobgy M, Krause K, Hamilton K, Estfanous S, Daily KP, Abu Khweek A, Hegazi A, Anne MNK, Carafice C, Robledo-Avila F, Saqr Y, Zhang X, Bonfield TL, Gavrilin MA, Partida-Sanchez S, Seveau S, Cormet-Boyaka E, Amer AO u. a. (2022). CFTR Modulators Restore Acidification of Autophago-Lysosomes and Bacterial Clearance in Cystic Fibrosis Macrophages. Frontiers in Cellular and Infection Microbiology, 12.

MPG.PuRe

2021

Glaser LV, Steiger M, Fuchs A, van Bömmel A, Einfeldt E, Chung H-R, Vingron M und Meijsing SH. (2021). Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq. Nucleic Acids Research (London), 49(21), 12178–12195.

MPG.PuRe

Vowinckel J, Hartl J, Marx H, Kerick M, Runggatscher K, Keller MA, Mülleder M, Day J, Weber M, Rinnerthaler M, Yu JSL, Aulakh SK, Lehmann A, Mattanovich D, Timmermann B, Zhang N, Dunn CD, MacRae JI, Breitenbach M u. a. (2021). The metabolic growth limitations of petite cells lacking the mitochondrial genome. Nature Metabolism, 3(11), 1521–1535.

MPG.PuRe

Bothe M, Buschow R und Meijsing SH. (2021). Glucocorticoid signaling induces transcriptional memory and universally reversible chromatin changes. Life science alliance, 4(10).

MPG.PuRe

Guse A, Halte M, Hüsing S und Erhardt M. (2021). Hook‐basal‐body assembly state dictates substrate specificity of the flagellar type‐III secretion system. Molecular Microbiology, 116(4), 1189–1200.

MPG.PuRe

Birk MS, Charpentier E und Frese CK. (2021). Automated Phosphopeptide Enrichment for Gram-Positive Bacteria. Journal of Proteome Research, 20(10), 4886–4892.

MPG.PuRe

Birk MS, Ahmed-Begrich R, Tran S, Elsholz AKW, Frese CK und Charpentier E. (2021). Time-Resolved Proteome Analysis of Listeria monocytogenes during Infection Reveals the Role of the AAA+ Chaperone ClpC for Host Cell Adaptation. mSystems, 6(4), e00215–21.

MPG.PuRe

Estfanous S, Daily KP, Eltobgy M, Deems NP, Anne MNK, Krause K, Badr A, Hamilton K, Carafice C, Hegazi A, Abu Khweek A, Kelani H, Nimjee S, Awad H, Zhang X, Cormet-Boyaka E, Haffez H, Soror S, Mikhail A, … Amer AO. (2021). Elevated Expression of MiR-17 in Microglia of Alzheimer’s Disease Patients Abrogates Autophagy-Mediated Amyloid-β Degradation. Frontiers in immunology, 12, 705581.

MPG.PuRe

Krishnamoorthy G, Kaiser P, Constant P, Frese CK, Abu Abed U, Schmid M, Brinkmann V, Daffé M und Kaufmann SHE. (2021). Role of Premycofactocin Synthase in Growth, Microaerophilic Adaptation, and Metabolism of Mycobacterium tuberculosis. mBio, 12(4), e0166521.

MPG.PuRe

Hüsing S, Halte M, van Look U, Guse A, Gálvez EJC, Charpentier E, Blair DF, Erhardt M und Renault TT. (2021). Control of membrane barrier during bacterial type-III protein secretion. Nature Communications, 12(1), 3999.

MPG.PuRe

Beerens D, Franch-Arroyo S, Sullivan TJ, Goosmann C, Brinkmann V und Charpentier E. (2021). Survival Strategies of Streptococcus pyogenes in Response to Phage Infection. Viruses, 13(4), 612.

MPG.PuRe

Kulik M, Bothe M, Kibar G, Fuchs A, Schöne S, Prekovic S, Mayayo-Peralta I, Chung H-R, Zwart W, Helsen C, Claessens F und Meijsing SH. (2021). Androgen and glucocorticoid receptor direct distinct transcriptional programs by receptor-specific and shared DNA binding sites. Nucleic Acids Research (London), 49(7), 3856–3875.

MPG.PuRe

Apel F, Andreeva L, Knackstedt LS, Streeck R, Frese CK, Goosmann C, Hopfner K-P und Zychlinsky A. (2021). The cytosolic DNA sensor cGAS recognizes neutrophil extracellular traps. Science Signaling, 14(673), eaax7942.

MPG.PuRe

Estfanous S, Krause K, Anne MNK, Eltobgy M, Caution K, Abu Khweek A, Hamilton K, Badr A, Daily K, Carafice C, Baetzhold D, Zhang X, Li T, Wen H, Gavrilin MA, Haffez H, Soror S und Amer AO. (2021). Gasdermin D restricts Burkholderia cenocepacia infection in vitro and in vivo. Scientific Reports, 11(1), 855.

MPG.PuRe

Estfanous S, Krause K, Anne MNK, Eltobgy M, Caution K, Khweek AA, Hamilton K, Badr A, Daily K, Carafice C, Baetzhold D, Zhang X, Li T, Wen H, Gavrilin MA, Haffez H, Soror S und Amer AO. (2021). Author Correction: Gasdermin D restricts Burkholderia cenocepacia infection in vitro and in vivo. Scientific Reports, 11(1), 12447.

MPG.PuRe

Oliveira T, Zhang M, Joo EJ, Abdel-Azim H, Chen C-W, Yang L, Chou C-H, Qin X, Chen J, Alagesan K, Almeida A, Jacob F, Packer NH, von Itzstein M, Heisterkamp N und Kolarich D. (2021). Glycoproteome remodeling in MLL-rearranged B-cell precursor acute lymphoblastic leukemia. Theranostics, 11(19), 9519–9537.

MPG.PuRe

Otaru N, Ye K, Mujezinovic D, Berchtold L, Constancias F, Cornejo FA, Krzystek A, de Wouters T, Braegger C, Lacroix C und Pugin B. (2021). GABA Production by Human Intestinal Bacteroides spp.: Prevalence, Regulation, and Role in Acid Stress Tolerance. Frontiers in Microbiology, 12, 656895.

MPG.PuRe

2020

Bae-Gartz I, Kasper P, Großmann N, Breuer S, Janoschek R, Kretschmer T, Appel S, Schmitz L, Vohlen C, Quaas A, Schweiger MR, Grimm C, Fischer A, Ferrari N, Graf C, Frese CK, Lang S, Demir M, Schramm C, … Hucklenbruch-Rother E. (2020). Maternal exercise conveys protection against NAFLD in the offspring via hepatic metabolic programming. Scientific Reports, 10(1), 15424.

MPG.PuRe

Gálvez EJC, Iljazovic A, Amend L, Lesker TR, Renault T, Thiemann S, Hao L, Roy U, Gronow A, Charpentier E und Strowig T. (2020). Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp. Cell Host & Microbe, 28(6), 838–852.e6.

MPG.PuRe

Lichtenegger S, Stiehler J, Saiger S, Zauner A, Kleinhappl B, Bernecker C, Schlenke P, Wagner GE, Krause K, Gastager M und Steinmetz I. (2020). Burkholderia pseudomallei triggers canonical inflammasome activation in a human primary macrophage-based infection model. PLoS Neglected Tropical Diseases, 14(11), e0008840.

MPG.PuRe

Schnirch L, Nadler-Holly M, Siao S-W, Frese CK, Viner R und Liu F. (2020). Expanding the Depth and Sensitivity of Cross-Link Identification by Differential Ion Mobility Using High-Field Asymmetric Waveform Ion Mobility Spectrometry. Analytical Chemistry, 92(15), 10495–10503.

MPG.PuRe

Bratovič M, Fonfara I, Chylinski K, Gálvez EJC, Sullivan TJ, Boerno S, Timmermann B, Boettcher M und Charpentier E. (2020). Bridge helix arginines play a critical role in Cas9 sensitivity to mismatches. Nature Chemical Biology, 16(5), 587–595.

MPG.PuRe

Righetti F, Materne SL, Boss J, Eichner H, Charpentier E und Loh E. (2020). Characterization of a transcriptional TPP riboswitch in the human pathogen Neisseria meningitidis. RNA Biology, 17(5), 718–730.

MPG.PuRe

Schäfer H, Beckert B, Frese CK, Steinchen W, Nuss AM, Beckstette M, Hantke I, Driller K, Sudzinová P, Krásný L, Kaever V, Dersch P, Bange G, Wilson DN und Turgay K. (2020). The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis. PLoS Genetics, 16(3), e1008275.

MPG.PuRe

Broglia L, Lécrivain A-L, Renault TT, Hahnke K, Ahmed-Begrich R, Le Rhun A und Charpentier E. (2020). An RNA-seq based comparative approach reveals the transcriptome-wide interplay between 3'-to-5' exoRNases and RNase Y. Nature Communications, 11(1), 1587.

MPG.PuRe

Lautenschläger N, Popp PF und Mascher T. (2020). Development of a novel heterologous β-lactam-specific whole-cell biosensor in Bacillus subtilis. Journal of Biological Engineering, 14, 21.

MPG.PuRe

Makarova KS, Wolf YI, Iranzo J, Shmakov SA, Alkhnbashi OS, Brouns SJJ, Charpentier E, Cheng D, Haft DH, Horvath P, Moineau S, Mojica FJM, Scott D, Shah SA, Siksnys V, Terns MP, Venclovas Č, White MF, Yakunin AF, … Koonin EV. (2020). Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants. Nature Reviews Microbiology, 18, 67–83.

MPG.PuRe

Pausch P, Abdelshahid M, Steinchen W, Schäfer H, Gratani FL, Freibert S-A, Wolz C, Turgay K, Wilson DN und Bange G. (2020). Structural Basis for Regulation of the Opposing (p)ppGpp Synthetase and Hydrolase within the Stringent Response Orchestrator Rel. Cell Reports, 32(11), 108157.

MPG.PuRe

2019

Zhan X, Li B, Zhan X, Schlüter H, Jungblut PR und Coorssen JR. (2019). Innovating the Concept and Practice of Two-Dimensional Gel Electrophoresis in the Analysis of Proteomes at the Proteoform Level. Proteomes, 7(4), 36.

MPG.PuRe

Ratner HK, Escalera-Maurer A, Le Rhun A, Jaggavarapu S, Wozniak JE, Crispell EK, Charpentier E und Weiss DS. (2019). Catalytically Active Cas9 Mediates Transcriptional Interference to Facilitate Bacterial Virulence. Molecular Cell, 75(3), 498–510.e5.

MPG.PuRe

Le Rhun A, Escalera-Maurer A, Bratovič M und Charpentier E. (2019). CRISPR-Cas in Streptococcus pyogenes. RNA Biology, 16(4), 380–389.

MPG.PuRe

Ugolini M und Sander LE. (2019). Dead or alive: how the immune system detects microbial viability. Current Opinion in Immunology, 56, 60–66.

MPG.PuRe

Mulvenna N, Hantke I, Burchell L, Nicod S, Bell D, Turgay K und Wigneshweraraj S. (2019). Xenogeneic modulation of the ClpCP protease of Bacillus subtilis by a phage-encoded adaptor-like protein. The Journal of Biological Chemistry, 294(46), 17501–17511.

MPG.PuRe

2018

Lécrivain A-L, Le Rhun A, Renault TT, Ahmed-Begrich R, Hahnke K und Charpentier E. (2018). In vivo 3'-to-5' exoribonuclease targetomes of Streptococcus pyogenes. Proceedings of the National Academy of Sciences of the United States of America, 115(46), 11814–11819.

MPG.PuRe

Tsatsaronis JA, Franch-Arroyo S, Resch U und Charpentier E. (2018). Extracellular Vesicle RNA: A Universal Mediator of Microbial Communication? Trends in Microbiology, 26(5), 401–410.

MPG.PuRe

Hille F, Richter H, Wong SP, Bratovič M, Ressel S und Charpentier E. (2018). The Biology of CRISPR-Cas: Backward and Forward. Cell, 172(6), 1239–1259.

MPG.PuRe

Charpentier E. (2018). Spotlight on… Emmanuelle Charpentier. FEMS Microbiology Letters, 365(4).

MPG.PuRe

Labuhn M, Adams FF, Ng M, Knoess S, Schambach A, Charpentier EM, Schwarzer A, Mateo JL, Klusmann J-H und Heckl D. (2018). Refined sgRNA efficacy prediction improves large- and small-scale CRISPR -Cas9 applications. Nucleic Acids Research (London), 46(3), 1375–1385.

MPG.PuRe

Broglia L, Materne S, Lécrivain A-L, Hahnke K, Le Rhun A und Charpentier E. (2018). RNase Y-mediated regulation of the streptococcal pyrogenic exotoxin B. RNA Biology, 15(10), 1336–1347.

MPG.PuRe

Buchkapitel (3)

2023

Alagesan K und Charpentier E. (2023). Systems-Wide Site-Specific Analysis of Glycoproteins. In K. Gevaert (Hrsg.), Mass Spectrometry-Based Proteomics, 151–165. New York, NY: Springer US.

MPG.PuRe

2021

Lisacek F, Alagesan K, Hayes C, Lippold S und de Haan N. (2021). Bioinformatics in Immunoglobulin Glycosylation Analysis. In Antibody Glycosylation.

MPG.PuRe

2020

Alagesan K, Hoffmann M, Rapp E und Kolarich D. (2020). Glycoproteomics Technologies in Glycobiotechnology. In Advances in Glycobiotechnology.

MPG.PuRe

Stellungnahme (1)

2019

Davies K und Charpentier E. (2019). Finding Her Niche: An Interview with Emmanuelle Charpentier. The CRISPR Journal, 2(1), 17–22.

MPG.PuRe

Kommentar (3)

2022

Zhan X und Jungblut PR. (2022). Commentary: The comparison between 2DE-MS and bottom-up LC-MS demands high-end techniques for both technologies. Electrophoresis, 43 (11), 1242-1245.

MPG.PuRe

2021

Dougan DA, Alver R und Turgay K. (2021). Exploring a potential Achilles heel of Mycobacterium tuberculosis: defining the ClpC1 interactome. The FEBS Journal, 288 (1), 95-98.

MPG.PuRe

2019

Lander ES, Baylis F, Zhang F, Charpentier E, Berg P, Bourgain C, Friedrich B, Joung JK, Li J, Liu D, Naldini L, Nie J-B, Qiu R, Schoene-Seifert B, Shao F, Terry S, Wei W und Winnacker E-L. (2019). Adopt a moratorium on heritable genome editing. Nature, 567, 165-168.

MPG.PuRe

Editorial (1)

2019

Charpentier E, Elsholz A und Marchfelder A. (2019). CRISPR-Cas: more than ten years and still full of mysteries. RNA Biology, 16(4), 377–379. Landes Bioscience.

MPG.PuRe