Publikationen

Zeitschriftenartikel (44)

2022
Christensen, S, Rämisch, S, & André, I. (2022). DnaK response to expression of protein mutants is dependent on translation rate and stability. Communications Biology, 5(1), 597.
Buttress, JA, Halte, M, te Winkel, JD, Erhardt, M, Popp, PF, & Strahl, H. (2022). A guide for membrane potential measurements in Gram-negative bacteria using voltage-sensitive dyes. Microbiology, 168(9), 001227 .
Popp, PF, & Erhardt, M. (2022). Supercoiled filaments propel them all. Cell, 185(19), 3461–3463.
Stelbrink, B, Von Rintelen, T, Richter, K, Finstermeier, K, Frahnert, S, Cracraft, J, & Hofreiter, M. (2022). Insights into the geographical origin and phylogeographical patterns of Paradisaea birds-of-paradise. Zoological Journal of the Linnean Society, zlac010.
Halte, M, Wörmann, ME, Bogisch, M, Erhardt, M, & Tschowri, N. (2022). BldD‐based bimolecular fluorescence complementation for in vivo detection of the second messenger cyclic di‐GMP. Molecular Microbiology, 117(3), 705–713.
Badr, A, Eltobgy, M, Krause, K, Hamilton, K, Estfanous, S, Daily, KP, Abu Khweek, A, Hegazi, A, Anne, MNK, Carafice, C, Robledo-Avila, F, Saqr, Y, Zhang, X, Bonfield, TL, Gavrilin, MA, Partida-Sanchez, S, Seveau, S, Cormet-Boyaka, E, Amer, AO, u. a. (2022). CFTR Modulators Restore Acidification of Autophago-Lysosomes and Bacterial Clearance in Cystic Fibrosis Macrophages. Frontiers in Cellular and Infection Microbiology, 12.
2021
Glaser, LV, Steiger, M, Fuchs, A, van Bömmel, A, Einfeldt, E, Chung, H-R, Vingron, M, & Meijsing, SH. (2021). Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq. Nucleic Acids Research (London), 49(21), 12178–12195.
Vowinckel, J, Hartl, J, Marx, H, Kerick, M, Runggatscher, K, Keller, MA, Mülleder, M, Day, J, Weber, M, Rinnerthaler, M, Yu, JSL, Aulakh, SK, Lehmann, A, Mattanovich, D, Timmermann, B, Zhang, N, Dunn, CD, MacRae, JI, Breitenbach, M, u. a. (2021). The metabolic growth limitations of petite cells lacking the mitochondrial genome. Nature Metabolism, 3(11), 1521–1535.
Bothe, M, Buschow, R, & Meijsing, SH. (2021). Glucocorticoid signaling induces transcriptional memory and universally reversible chromatin changes. Life science alliance, 4(10).
Guse, A, Halte, M, Hüsing, S, & Erhardt, M. (2021). Hook‐basal‐body assembly state dictates substrate specificity of the flagellar type‐III secretion system. Molecular Microbiology, 116(4), 1189–1200.
Birk, MS, Charpentier, E, & Frese, CK. (2021). Automated Phosphopeptide Enrichment for Gram-Positive Bacteria. Journal of Proteome Research, 20(10), 4886–4892.
Birk, MS, Ahmed-Begrich, R, Tran, S, Elsholz, AKW, Frese, CK, & Charpentier, E. (2021). Time-Resolved Proteome Analysis of Listeria monocytogenes during Infection Reveals the Role of the AAA+ Chaperone ClpC for Host Cell Adaptation. mSystems, 6(4), e00215–21.
Estfanous, S, Daily, KP, Eltobgy, M, Deems, NP, Anne, MNK, Krause, K, Badr, A, Hamilton, K, Carafice, C, Hegazi, A, Abu Khweek, A, Kelani, H, Nimjee, S, Awad, H, Zhang, X, Cormet-Boyaka, E, Haffez, H, Soror, S, Mikhail, A, … Amer, AO. (2021). Elevated Expression of MiR-17 in Microglia of Alzheimer’s Disease Patients Abrogates Autophagy-Mediated Amyloid-β Degradation. Frontiers in immunology, 12, 705581.
Krishnamoorthy, G, Kaiser, P, Constant, P, Frese, CK, Abu Abed, U, Schmid, M, Brinkmann, V, Daffé, M, & Kaufmann, SHE. (2021). Role of Premycofactocin Synthase in Growth, Microaerophilic Adaptation, and Metabolism of Mycobacterium tuberculosis. mBio, 12(4), e0166521.
Hüsing, S, Halte, M, van Look, U, Guse, A, Gálvez, EJC, Charpentier, E, Blair, DF, Erhardt, M, & Renault, TT. (2021). Control of membrane barrier during bacterial type-III protein secretion. Nature Communications, 12(1), 3999.
Beerens, D, Franch-Arroyo, S, Sullivan, TJ, Goosmann, C, Brinkmann, V, & Charpentier, E. (2021). Survival Strategies of Streptococcus pyogenes in Response to Phage Infection. Viruses, 13(4), 612.
Kulik, M, Bothe, M, Kibar, G, Fuchs, A, Schöne, S, Prekovic, S, Mayayo-Peralta, I, Chung, H-R, Zwart, W, Helsen, C, Claessens, F, & Meijsing, SH. (2021). Androgen and glucocorticoid receptor direct distinct transcriptional programs by receptor-specific and shared DNA binding sites. Nucleic Acids Research (London), 49(7), 3856–3875.
Apel, F, Andreeva, L, Knackstedt, LS, Streeck, R, Frese, CK, Goosmann, C, Hopfner, K-P, & Zychlinsky, A. (2021). The cytosolic DNA sensor cGAS recognizes neutrophil extracellular traps. Science Signaling, 14(673), eaax7942.
Estfanous, S, Krause, K, Anne, MNK, Eltobgy, M, Caution, K, Abu Khweek, A, Hamilton, K, Badr, A, Daily, K, Carafice, C, Baetzhold, D, Zhang, X, Li, T, Wen, H, Gavrilin, MA, Haffez, H, Soror, S, & Amer, AO. (2021). Gasdermin D restricts Burkholderia cenocepacia infection in vitro and in vivo. Scientific Reports, 11(1), 855.
Estfanous, S, Krause, K, Anne, MNK, Eltobgy, M, Caution, K, Khweek, AA, Hamilton, K, Badr, A, Daily, K, Carafice, C, Baetzhold, D, Zhang, X, Li, T, Wen, H, Gavrilin, MA, Haffez, H, Soror, S, & Amer, AO. (2021). Author Correction: Gasdermin D restricts Burkholderia cenocepacia infection in vitro and in vivo. Scientific Reports, 11(1), 12447.
Oliveira, T, Zhang, M, Joo, EJ, Abdel-Azim, H, Chen, C-W, Yang, L, Chou, C-H, Qin, X, Chen, J, Alagesan, K, Almeida, A, Jacob, F, Packer, NH, von Itzstein, M, Heisterkamp, N, & Kolarich, D. (2021). Glycoproteome remodeling in MLL-rearranged B-cell precursor acute lymphoblastic leukemia. Theranostics, 11(19), 9519–9537.
Otaru, N, Ye, K, Mujezinovic, D, Berchtold, L, Constancias, F, Cornejo, FA, Krzystek, A, de Wouters, T, Braegger, C, Lacroix, C, & Pugin, B. (2021). GABA Production by Human Intestinal Bacteroides spp.: Prevalence, Regulation, and Role in Acid Stress Tolerance. Frontiers in Microbiology, 12, 656895.
2020
Bae-Gartz, I, Kasper, P, Großmann, N, Breuer, S, Janoschek, R, Kretschmer, T, Appel, S, Schmitz, L, Vohlen, C, Quaas, A, Schweiger, MR, Grimm, C, Fischer, A, Ferrari, N, Graf, C, Frese, CK, Lang, S, Demir, M, Schramm, C, … Hucklenbruch-Rother, E. (2020). Maternal exercise conveys protection against NAFLD in the offspring via hepatic metabolic programming. Scientific Reports, 10(1), 15424.
Gálvez, EJC, Iljazovic, A, Amend, L, Lesker, TR, Renault, T, Thiemann, S, Hao, L, Roy, U, Gronow, A, Charpentier, E, & Strowig, T. (2020). Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp. Cell Host & Microbe, 28(6), 838–852.e6.
Lichtenegger, S, Stiehler, J, Saiger, S, Zauner, A, Kleinhappl, B, Bernecker, C, Schlenke, P, Wagner, GE, Krause, K, Gastager, M, & Steinmetz, I. (2020). Burkholderia pseudomallei triggers canonical inflammasome activation in a human primary macrophage-based infection model. PLoS Neglected Tropical Diseases, 14(11), e0008840.
Schnirch, L, Nadler-Holly, M, Siao, S-W, Frese, CK, Viner, R, & Liu, F. (2020). Expanding the Depth and Sensitivity of Cross-Link Identification by Differential Ion Mobility Using High-Field Asymmetric Waveform Ion Mobility Spectrometry. Analytical Chemistry, 92(15), 10495–10503.
Bratovič, M, Fonfara, I, Chylinski, K, Gálvez, EJC, Sullivan, TJ, Boerno, S, Timmermann, B, Boettcher, M, & Charpentier, E. (2020). Bridge helix arginines play a critical role in Cas9 sensitivity to mismatches. Nature Chemical Biology, 16(5), 587–595.
Righetti, F, Materne, SL, Boss, J, Eichner, H, Charpentier, E, & Loh, E. (2020). Characterization of a transcriptional TPP riboswitch in the human pathogen Neisseria meningitidis. RNA Biology, 17(5), 718–730.
Schäfer, H, Beckert, B, Frese, CK, Steinchen, W, Nuss, AM, Beckstette, M, Hantke, I, Driller, K, Sudzinová, P, Krásný, L, Kaever, V, Dersch, P, Bange, G, Wilson, DN, & Turgay, K. (2020). The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis. PLoS Genetics, 16(3), e1008275.
Broglia, L, Lécrivain, A-L, Renault, TT, Hahnke, K, Ahmed-Begrich, R, Le Rhun, A, & Charpentier, E. (2020). An RNA-seq based comparative approach reveals the transcriptome-wide interplay between 3'-to-5' exoRNases and RNase Y. Nature Communications, 11(1), 1587.
Lautenschläger, N, Popp, PF, & Mascher, T. (2020). Development of a novel heterologous β-lactam-specific whole-cell biosensor in Bacillus subtilis. Journal of Biological Engineering, 14, 21.
Makarova, KS, Wolf, YI, Iranzo, J, Shmakov, SA, Alkhnbashi, OS, Brouns, SJJ, Charpentier, E, Cheng, D, Haft, DH, Horvath, P, Moineau, S, Mojica, FJM, Scott, D, Shah, SA, Siksnys, V, Terns, MP, Venclovas, Č, White, MF, Yakunin, AF, … Koonin, EV. (2020). Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants. Nature Reviews Microbiology, 18, 67–83.
Pausch, P, Abdelshahid, M, Steinchen, W, Schäfer, H, Gratani, FL, Freibert, S-A, Wolz, C, Turgay, K, Wilson, DN, & Bange, G. (2020). Structural Basis for Regulation of the Opposing (p)ppGpp Synthetase and Hydrolase within the Stringent Response Orchestrator Rel. Cell Reports, 32(11), 108157.
2019
Zhan, X, Li, B, Zhan, X, Schlüter, H, Jungblut, PR, & Coorssen, JR. (2019). Innovating the Concept and Practice of Two-Dimensional Gel Electrophoresis in the Analysis of Proteomes at the Proteoform Level. Proteomes, 7(4), 36.
Ratner, HK, Escalera-Maurer, A, Le Rhun, A, Jaggavarapu, S, Wozniak, JE, Crispell, EK, Charpentier, E, & Weiss, DS. (2019). Catalytically Active Cas9 Mediates Transcriptional Interference to Facilitate Bacterial Virulence. Molecular Cell, 75(3), 498–510.e5.
Le Rhun, A, Escalera-Maurer, A, Bratovič, M, & Charpentier, E. (2019). CRISPR-Cas in Streptococcus pyogenes. RNA Biology, 16(4), 380–389.
Ugolini, M, & Sander, LE. (2019). Dead or alive: how the immune system detects microbial viability. Current Opinion in Immunology, 56, 60–66.
Mulvenna, N, Hantke, I, Burchell, L, Nicod, S, Bell, D, Turgay, K, & Wigneshweraraj, S. (2019). Xenogeneic modulation of the ClpCP protease of Bacillus subtilis by a phage-encoded adaptor-like protein. The Journal of Biological Chemistry, 294(46), 17501–17511.
2018
Lécrivain, A-L, Le Rhun, A, Renault, TT, Ahmed-Begrich, R, Hahnke, K, & Charpentier, E. (2018). In vivo 3'-to-5' exoribonuclease targetomes of Streptococcus pyogenes. Proceedings of the National Academy of Sciences of the United States of America, 115(46), 11814–11819.
Tsatsaronis, JA, Franch-Arroyo, S, Resch, U, & Charpentier, E. (2018). Extracellular Vesicle RNA: A Universal Mediator of Microbial Communication? Trends in Microbiology, 26(5), 401–410.
Hille, F, Richter, H, Wong, SP, Bratovič, M, Ressel, S, & Charpentier, E. (2018). The Biology of CRISPR-Cas: Backward and Forward. Cell, 172(6), 1239–1259.
Charpentier, E. (2018). Spotlight on… Emmanuelle Charpentier. FEMS Microbiology Letters, 365(4).
Labuhn, M, Adams, FF, Ng, M, Knoess, S, Schambach, A, Charpentier, EM, Schwarzer, A, Mateo, JL, Klusmann, J-H, & Heckl, D. (2018). Refined sgRNA efficacy prediction improves large- and small-scale CRISPR -Cas9 applications. Nucleic Acids Research (London), 46(3), 1375–1385.
Broglia, L, Materne, S, Lécrivain, A-L, Hahnke, K, Le Rhun, A, & Charpentier, E. (2018). RNase Y-mediated regulation of the streptococcal pyrogenic exotoxin B. RNA Biology, 15(10), 1336–1347.

Buchkapitel (2)

2021
Lisacek, F, Alagesan, K, Hayes, C, Lippold, S, & de Haan, N. (2021). Bioinformatics in Immunoglobulin Glycosylation Analysis. In Antibody Glycosylation.
2020
Alagesan, K, Hoffmann, M, Rapp, E, & Kolarich, D. (2020). Glycoproteomics Technologies in Glycobiotechnology. In Advances in Glycobiotechnology.

Stellungnahme (1)

2019
Davies, K, & Charpentier, E. (2019). Finding Her Niche: An Interview with Emmanuelle Charpentier. The CRISPR Journal, 2(1), 17–22.

Kommentar (3)

2022
Zhan, X, & Jungblut, PR. (2022). Commentary: The comparison between 2DE-MS and bottom-up LC-MS demands high-end techniques for both technologies. Electrophoresis, 43 (11), 1242-1245.
2021
Dougan, DA, Alver, R, & Turgay, K. (2021). Exploring a potential Achilles heel of Mycobacterium tuberculosis: defining the ClpC1 interactome. The FEBS Journal, 288 (1), 95-98.
2019
Lander, ES, Baylis, F, Zhang, F, Charpentier, E, Berg, P, Bourgain, C, Friedrich, B, Joung, JK, Li, J, Liu, D, Naldini, L, Nie, J-B, Qiu, R, Schoene-Seifert, B, Shao, F, Terry, S, Wei, W, & Winnacker, E-L. (2019). Adopt a moratorium on heritable genome editing. Nature, 567, 165-168.

Editorial (1)

2019
Charpentier, E, Elsholz, A, & Marchfelder, A. (2019). CRISPR-Cas: more than ten years and still full of mysteries. RNA Biology, 16(4), 377–379. Landes Bioscience.
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