Publikationen

Zeitschriftenartikel (48)

2023

Naseri, G. (2023). A roadmap to establish a comprehensive platform for sustainable manufacturing of natural products in yeast. Nat Commun, 14(1), 1916.

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Driller, K, Cornejo, FA, & Turgay, K. (2023). (p)ppGpp – an important player during heat shock response. microLife, 4, uqad017.

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Roske, Y, Lindemann, F, Diehl, A, Cremer, N, Higman, VA, Schlegel, B, Leidert, M, Driller, K, Turgay, K, Schmieder, P, Heinemann, U, & Oschkinat, H. (2023). TapA acts as specific chaperone in TasA filament formation by strand complementation. Proceedings of the National Academy of Sciences, 120.

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2022

Christensen, S, Rämisch, S, & André, I. (2022). DnaK response to expression of protein mutants is dependent on translation rate and stability. Communications Biology, 5(1), 597.

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Tcyganov, EN, Sanseviero, E, Marvel, D, Beer, T, Tang, H-Y, Hembach, P, Speicher, DW, Zhang, Q, Donthireddy, LR, Mostafa, A, Tsyganova, S, Pisarev, V, Laufer, T, Ignatov, D, Ferrone, S, Meyer, C, Maby-El Hajjami, H, Speiser, DE, Altiok, S, … Gabrilovich, DI. (2022). Peroxynitrite in the tumor microenvironment changes the profile of antigens allowing escape from cancer immunotherapy. Cancer Cell, 40(10), 1173–1189.e6.

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Full

Buttress, JA, Halte, M, te Winkel, JD, Erhardt, M, Popp, PF, & Strahl, H. (2022). A guide for membrane potential measurements in Gram-negative bacteria using voltage-sensitive dyes. Microbiology, 168(9), 001227 .

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Popp, PF, & Erhardt, M. (2022). Supercoiled filaments propel them all. Cell, 185(19), 3461–3463.

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Stelbrink, B, Von Rintelen, T, Richter, K, Finstermeier, K, Frahnert, S, Cracraft, J, & Hofreiter, M. (2022). Insights into the geographical origin and phylogeographical patterns of Paradisaea birds-of-paradise. Zoological Journal of the Linnean Society, zlac010.

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Halte, M, Wörmann, ME, Bogisch, M, Erhardt, M, & Tschowri, N. (2022). BldD‐based bimolecular fluorescence complementation for in vivo detection of the second messenger cyclic di‐GMP. Molecular Microbiology, 117(3), 705–713.

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Badr, A, Eltobgy, M, Krause, K, Hamilton, K, Estfanous, S, Daily, KP, Abu Khweek, A, Hegazi, A, Anne, MNK, Carafice, C, Robledo-Avila, F, Saqr, Y, Zhang, X, Bonfield, TL, Gavrilin, MA, Partida-Sanchez, S, Seveau, S, Cormet-Boyaka, E, Amer, AO, u. a. (2022). CFTR Modulators Restore Acidification of Autophago-Lysosomes and Bacterial Clearance in Cystic Fibrosis Macrophages. Frontiers in Cellular and Infection Microbiology, 12.

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2021

Glaser, LV, Steiger, M, Fuchs, A, van Bömmel, A, Einfeldt, E, Chung, H-R, Vingron, M, & Meijsing, SH. (2021). Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq. Nucleic Acids Research (London), 49(21), 12178–12195.

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Vowinckel, J, Hartl, J, Marx, H, Kerick, M, Runggatscher, K, Keller, MA, Mülleder, M, Day, J, Weber, M, Rinnerthaler, M, Yu, JSL, Aulakh, SK, Lehmann, A, Mattanovich, D, Timmermann, B, Zhang, N, Dunn, CD, MacRae, JI, Breitenbach, M, u. a. (2021). The metabolic growth limitations of petite cells lacking the mitochondrial genome. Nature Metabolism, 3(11), 1521–1535.

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Bothe, M, Buschow, R, & Meijsing, SH. (2021). Glucocorticoid signaling induces transcriptional memory and universally reversible chromatin changes. Life science alliance, 4(10).

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Guse, A, Halte, M, Hüsing, S, & Erhardt, M. (2021). Hook‐basal‐body assembly state dictates substrate specificity of the flagellar type‐III secretion system. Molecular Microbiology, 116(4), 1189–1200.

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Birk, MS, Charpentier, E, & Frese, CK. (2021). Automated Phosphopeptide Enrichment for Gram-Positive Bacteria. Journal of Proteome Research, 20(10), 4886–4892.

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Birk, MS, Ahmed-Begrich, R, Tran, S, Elsholz, AKW, Frese, CK, & Charpentier, E. (2021). Time-Resolved Proteome Analysis of Listeria monocytogenes during Infection Reveals the Role of the AAA+ Chaperone ClpC for Host Cell Adaptation. mSystems, 6(4), e00215–21.

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Estfanous, S, Daily, KP, Eltobgy, M, Deems, NP, Anne, MNK, Krause, K, Badr, A, Hamilton, K, Carafice, C, Hegazi, A, Abu Khweek, A, Kelani, H, Nimjee, S, Awad, H, Zhang, X, Cormet-Boyaka, E, Haffez, H, Soror, S, Mikhail, A, … Amer, AO. (2021). Elevated Expression of MiR-17 in Microglia of Alzheimer’s Disease Patients Abrogates Autophagy-Mediated Amyloid-β Degradation. Frontiers in immunology, 12, 705581.

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Krishnamoorthy, G, Kaiser, P, Constant, P, Frese, CK, Abu Abed, U, Schmid, M, Brinkmann, V, Daffé, M, & Kaufmann, SHE. (2021). Role of Premycofactocin Synthase in Growth, Microaerophilic Adaptation, and Metabolism of Mycobacterium tuberculosis. mBio, 12(4), e0166521.

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Hüsing, S, Halte, M, van Look, U, Guse, A, Gálvez, EJC, Charpentier, E, Blair, DF, Erhardt, M, & Renault, TT. (2021). Control of membrane barrier during bacterial type-III protein secretion. Nature Communications, 12(1), 3999.

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Beerens, D, Franch-Arroyo, S, Sullivan, TJ, Goosmann, C, Brinkmann, V, & Charpentier, E. (2021). Survival Strategies of Streptococcus pyogenes in Response to Phage Infection. Viruses, 13(4), 612.

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Kulik, M, Bothe, M, Kibar, G, Fuchs, A, Schöne, S, Prekovic, S, Mayayo-Peralta, I, Chung, H-R, Zwart, W, Helsen, C, Claessens, F, & Meijsing, SH. (2021). Androgen and glucocorticoid receptor direct distinct transcriptional programs by receptor-specific and shared DNA binding sites. Nucleic Acids Research (London), 49(7), 3856–3875.

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Apel, F, Andreeva, L, Knackstedt, LS, Streeck, R, Frese, CK, Goosmann, C, Hopfner, K-P, & Zychlinsky, A. (2021). The cytosolic DNA sensor cGAS recognizes neutrophil extracellular traps. Science Signaling, 14(673), eaax7942.

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Estfanous, S, Krause, K, Anne, MNK, Eltobgy, M, Caution, K, Abu Khweek, A, Hamilton, K, Badr, A, Daily, K, Carafice, C, Baetzhold, D, Zhang, X, Li, T, Wen, H, Gavrilin, MA, Haffez, H, Soror, S, & Amer, AO. (2021). Gasdermin D restricts Burkholderia cenocepacia infection in vitro and in vivo. Scientific Reports, 11(1), 855.

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Estfanous, S, Krause, K, Anne, MNK, Eltobgy, M, Caution, K, Khweek, AA, Hamilton, K, Badr, A, Daily, K, Carafice, C, Baetzhold, D, Zhang, X, Li, T, Wen, H, Gavrilin, MA, Haffez, H, Soror, S, & Amer, AO. (2021). Author Correction: Gasdermin D restricts Burkholderia cenocepacia infection in vitro and in vivo. Scientific Reports, 11(1), 12447.

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Oliveira, T, Zhang, M, Joo, EJ, Abdel-Azim, H, Chen, C-W, Yang, L, Chou, C-H, Qin, X, Chen, J, Alagesan, K, Almeida, A, Jacob, F, Packer, NH, von Itzstein, M, Heisterkamp, N, & Kolarich, D. (2021). Glycoproteome remodeling in MLL-rearranged B-cell precursor acute lymphoblastic leukemia. Theranostics, 11(19), 9519–9537.

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Otaru, N, Ye, K, Mujezinovic, D, Berchtold, L, Constancias, F, Cornejo, FA, Krzystek, A, de Wouters, T, Braegger, C, Lacroix, C, & Pugin, B. (2021). GABA Production by Human Intestinal Bacteroides spp.: Prevalence, Regulation, and Role in Acid Stress Tolerance. Frontiers in Microbiology, 12, 656895.

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2020

Bae-Gartz, I, Kasper, P, Großmann, N, Breuer, S, Janoschek, R, Kretschmer, T, Appel, S, Schmitz, L, Vohlen, C, Quaas, A, Schweiger, MR, Grimm, C, Fischer, A, Ferrari, N, Graf, C, Frese, CK, Lang, S, Demir, M, Schramm, C, … Hucklenbruch-Rother, E. (2020). Maternal exercise conveys protection against NAFLD in the offspring via hepatic metabolic programming. Scientific Reports, 10(1), 15424.

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Gálvez, EJC, Iljazovic, A, Amend, L, Lesker, TR, Renault, T, Thiemann, S, Hao, L, Roy, U, Gronow, A, Charpentier, E, & Strowig, T. (2020). Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp. Cell Host & Microbe, 28(6), 838–852.e6.

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Lichtenegger, S, Stiehler, J, Saiger, S, Zauner, A, Kleinhappl, B, Bernecker, C, Schlenke, P, Wagner, GE, Krause, K, Gastager, M, & Steinmetz, I. (2020). Burkholderia pseudomallei triggers canonical inflammasome activation in a human primary macrophage-based infection model. PLoS Neglected Tropical Diseases, 14(11), e0008840.

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Schnirch, L, Nadler-Holly, M, Siao, S-W, Frese, CK, Viner, R, & Liu, F. (2020). Expanding the Depth and Sensitivity of Cross-Link Identification by Differential Ion Mobility Using High-Field Asymmetric Waveform Ion Mobility Spectrometry. Analytical Chemistry, 92(15), 10495–10503.

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Bratovič, M, Fonfara, I, Chylinski, K, Gálvez, EJC, Sullivan, TJ, Boerno, S, Timmermann, B, Boettcher, M, & Charpentier, E. (2020). Bridge helix arginines play a critical role in Cas9 sensitivity to mismatches. Nature Chemical Biology, 16(5), 587–595.

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Righetti, F, Materne, SL, Boss, J, Eichner, H, Charpentier, E, & Loh, E. (2020). Characterization of a transcriptional TPP riboswitch in the human pathogen Neisseria meningitidis. RNA Biology, 17(5), 718–730.

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Schäfer, H, Beckert, B, Frese, CK, Steinchen, W, Nuss, AM, Beckstette, M, Hantke, I, Driller, K, Sudzinová, P, Krásný, L, Kaever, V, Dersch, P, Bange, G, Wilson, DN, & Turgay, K. (2020). The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis. PLoS Genetics, 16(3), e1008275.

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Broglia, L, Lécrivain, A-L, Renault, TT, Hahnke, K, Ahmed-Begrich, R, Le Rhun, A, & Charpentier, E. (2020). An RNA-seq based comparative approach reveals the transcriptome-wide interplay between 3'-to-5' exoRNases and RNase Y. Nature Communications, 11(1), 1587.

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Lautenschläger, N, Popp, PF, & Mascher, T. (2020). Development of a novel heterologous β-lactam-specific whole-cell biosensor in Bacillus subtilis. Journal of Biological Engineering, 14, 21.

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Makarova, KS, Wolf, YI, Iranzo, J, Shmakov, SA, Alkhnbashi, OS, Brouns, SJJ, Charpentier, E, Cheng, D, Haft, DH, Horvath, P, Moineau, S, Mojica, FJM, Scott, D, Shah, SA, Siksnys, V, Terns, MP, Venclovas, Č, White, MF, Yakunin, AF, … Koonin, EV. (2020). Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants. Nature Reviews Microbiology, 18, 67–83.

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Pausch, P, Abdelshahid, M, Steinchen, W, Schäfer, H, Gratani, FL, Freibert, S-A, Wolz, C, Turgay, K, Wilson, DN, & Bange, G. (2020). Structural Basis for Regulation of the Opposing (p)ppGpp Synthetase and Hydrolase within the Stringent Response Orchestrator Rel. Cell Reports, 32(11), 108157.

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2019

Zhan, X, Li, B, Zhan, X, Schlüter, H, Jungblut, PR, & Coorssen, JR. (2019). Innovating the Concept and Practice of Two-Dimensional Gel Electrophoresis in the Analysis of Proteomes at the Proteoform Level. Proteomes, 7(4), 36.

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Ratner, HK, Escalera-Maurer, A, Le Rhun, A, Jaggavarapu, S, Wozniak, JE, Crispell, EK, Charpentier, E, & Weiss, DS. (2019). Catalytically Active Cas9 Mediates Transcriptional Interference to Facilitate Bacterial Virulence. Molecular Cell, 75(3), 498–510.e5.

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Le Rhun, A, Escalera-Maurer, A, Bratovič, M, & Charpentier, E. (2019). CRISPR-Cas in Streptococcus pyogenes. RNA Biology, 16(4), 380–389.

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Ugolini, M, & Sander, LE. (2019). Dead or alive: how the immune system detects microbial viability. Current Opinion in Immunology, 56, 60–66.

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Mulvenna, N, Hantke, I, Burchell, L, Nicod, S, Bell, D, Turgay, K, & Wigneshweraraj, S. (2019). Xenogeneic modulation of the ClpCP protease of Bacillus subtilis by a phage-encoded adaptor-like protein. The Journal of Biological Chemistry, 294(46), 17501–17511.

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2018

Lécrivain, A-L, Le Rhun, A, Renault, TT, Ahmed-Begrich, R, Hahnke, K, & Charpentier, E. (2018). In vivo 3'-to-5' exoribonuclease targetomes of Streptococcus pyogenes. Proceedings of the National Academy of Sciences of the United States of America, 115(46), 11814–11819.

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Tsatsaronis, JA, Franch-Arroyo, S, Resch, U, & Charpentier, E. (2018). Extracellular Vesicle RNA: A Universal Mediator of Microbial Communication? Trends in Microbiology, 26(5), 401–410.

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Hille, F, Richter, H, Wong, SP, Bratovič, M, Ressel, S, & Charpentier, E. (2018). The Biology of CRISPR-Cas: Backward and Forward. Cell, 172(6), 1239–1259.

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Charpentier, E. (2018). Spotlight on… Emmanuelle Charpentier. FEMS Microbiology Letters, 365(4).

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Labuhn, M, Adams, FF, Ng, M, Knoess, S, Schambach, A, Charpentier, EM, Schwarzer, A, Mateo, JL, Klusmann, J-H, & Heckl, D. (2018). Refined sgRNA efficacy prediction improves large- and small-scale CRISPR -Cas9 applications. Nucleic Acids Research (London), 46(3), 1375–1385.

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Broglia, L, Materne, S, Lécrivain, A-L, Hahnke, K, Le Rhun, A, & Charpentier, E. (2018). RNase Y-mediated regulation of the streptococcal pyrogenic exotoxin B. RNA Biology, 15(10), 1336–1347.

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Buchkapitel (2)

2021

Lisacek, F, Alagesan, K, Hayes, C, Lippold, S, & de Haan, N. (2021). Bioinformatics in Immunoglobulin Glycosylation Analysis. In Antibody Glycosylation.

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2020

Alagesan, K, Hoffmann, M, Rapp, E, & Kolarich, D. (2020). Glycoproteomics Technologies in Glycobiotechnology. In Advances in Glycobiotechnology.

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Stellungnahme (1)

2019

Davies, K, & Charpentier, E. (2019). Finding Her Niche: An Interview with Emmanuelle Charpentier. The CRISPR Journal, 2(1), 17–22.

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Kommentar (3)

2022

Zhan, X, & Jungblut, PR. (2022). Commentary: The comparison between 2DE-MS and bottom-up LC-MS demands high-end techniques for both technologies. Electrophoresis, 43 (11), 1242-1245.

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2021

Dougan, DA, Alver, R, & Turgay, K. (2021). Exploring a potential Achilles heel of Mycobacterium tuberculosis: defining the ClpC1 interactome. The FEBS Journal, 288 (1), 95-98.

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2019

Lander, ES, Baylis, F, Zhang, F, Charpentier, E, Berg, P, Bourgain, C, Friedrich, B, Joung, JK, Li, J, Liu, D, Naldini, L, Nie, J-B, Qiu, R, Schoene-Seifert, B, Shao, F, Terry, S, Wei, W, & Winnacker, E-L. (2019). Adopt a moratorium on heritable genome editing. Nature, 567, 165-168.

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Editorial (1)

2019

Charpentier, E, Elsholz, A, & Marchfelder, A. (2019). CRISPR-Cas: more than ten years and still full of mysteries. RNA Biology, 16(4), 377–379. Landes Bioscience.

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