Proteomics Platform Publications
Ajay Castro S, Passmore IJ, Ndeh D, Shaw HA, Ruda A, Burns K, Thomson S, Nagar R, Alagesan K, Reglinski M, Lucas K, Abouelhadid S, Schwarz-Linek U, Mawas F, Widmalm G, Wren BW and Dorfmueller HC (2025) Recombinant production platform for Group A Streptococcus glycoconjugate vaccines npj Vaccines, 10(1), 16. https://doi.org/10.1038/s41541-025-01068-2
Ignatov D, Shanmuganathan V, Ahmed-Begrich R, Alagesan K, Frese CK, Wang C, Krause K and Charpentier E (2024) Novel RNA-binding protein YebC enhances translation of proline-rich amino acid stretches in bacteria. bioRxiv 2024.08.26.607280 https://doi.org/10.1101/2024.08.26.607280
Muñoz-Gutierrez V, Cornejo FA, Schmidt K, Frese CK, Halte M, Erhardt M, Elsholz AKW, Turgay K and Charpentier E (2024) Bacillus subtilis remains translationally active after CRISPRi-mediated replication initiation arrest. mSystems 9:e00221-24. https://doi.org/10.1128/msystems.00221-24
Zhan X and Jungblut PR (2022) The comparison between 2DE‐MS and bottom‐up LC‐MS demands high‐end techniques for both technologies Electrophoresis, 43(11), 1242–1245. https://doi.org/10.1002/elps.202200036
Oliveira T, Zhang M, Joo EJ, Abdel-Azim H, Chen C-W, Yang L, Chou C-H, Qin X, Chen J, Alagesan K, Almeida A, Jacob F, Packer NH, Von Itzstein M, Heisterkamp N and Kolarich D (2021) Glycoproteome remodeling in MLL-rearranged B-cell precursor acute lymphoblastic leukemia Theranostics, 11(19), 9519–9537. https://doi.org/10.7150/thno.65398
Birk MS, Charpentier E and Frese CK (2021) Automated Phosphopeptide Enrichment for Gram-Positive Bacteria J. Proteome Res., 20(10), 4886–4892. https://doi.org/10.1021/acs.jproteome.1c00364
Birk MS, Ahmed-Begrich R, Tran S, Elsholz AKW, Frese CK and Charpentier E (2021) Time-Resolved Proteome Analysis of Listeria monocytogenes during Infection Reveals the Role of the AAA+ Chaperone ClpC for Host Cell Adaptation mSystems, 6(4), e00215-21. https://doi.org/10.1128/mSystems.00215-21
Krishnamoorthy G, Kaiser P, Constant P, Abu Abed U, Schmid M, Frese CK, Brinkmann V, Daffé M and Kaufmann SHE (2021) Role of Premycofactocin Synthase in Growth, Microaerophilic Adaptation, and Metabolism of Mycobacterium tuberculosis mBio, 12(4), e01665-21. https://doi.org/10.1128/mBio.01665-21
Apel F, Andreeva L, Knackstedt LS, Streeck R, Frese CK, Goosmann C, Hopfner K-P and Zychlinsky A (2021) The cytosolic DNA sensor cGAS recognizes neutrophil extracellular traps Sci. Signal., 14(673), eaax7942. https://doi.org/10.1126/scisignal.aax7942
Schnirch L, Nadler-Holly M, Siao S-W, Frese CK, Viner R and Liu F (2020) Expanding the Depth and Sensitivity of Cross-Link Identification by Differential Ion Mobility Using High-Field Asymmetric Waveform Ion Mobility Spectrometry Anal. Chem., 92(15), 10495–10503. https://doi.org/10.1021/acs.analchem.0c01273
Schäfer H, Beckert B, Frese CK, Steinchen W, Nuss AM, Beckstette M, Hantke I, Driller K, Sudzinová P, Krásný L, Kaever V, Dersch P, Bange G, Wilson DN and Turgay K (2020) The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis PLoS Genet, 16(3), e1008275. https://doi.org/10.1371/journal.pgen.1008275
Zhan X, Li B, Zhan X, Schlüter H, Jungblut PR and Coorssen JR (2019) Innovating the Concept and Practice of Two-Dimensional Gel Electrophoresis in the Analysis of Proteomes at the Proteoform Level Proteomes, 7(4), 36. https://doi.org/10.3390/proteomes7040036
Book Chapters
Alagesan K and Charpentier E (2023) Systems-Wide Site-Specific Analysis of Glycoproteins In K. Gevaert (Ed.), Mass Spectrometry-Based Proteomics, 2718, 151–165. New York, NY: Springer US. https://doi.org/10.1007/978-1-0716-3457-8_9
Lisacek F, Alagesan K, Hayes C, Lippold S and De Haan N (2021) Bioinformatics in Immunoglobulin Glycosylation Analysis In M. Pezer (Ed.), Antibody Glycosylation, 112, 205–233. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-030-76912-3_6
Alagesan K, Hoffmann M, Rapp E and Kolarich D (2020) Glycoproteomics Technologies in Glycobiotechnology In E. Rapp and U. Reichl (Eds.), Advances in Glycobiotechnology, 175, 413–434. Cham: Springer International Publishing. https://doi.org/10.1007/10_2020_144